I use 8000 Hz hyperpolling, so I ensure to connect the transceiver to a USB 3.x port directly routed to the CPU, not through a chipset first.
For 1000 Hz and below, it does not matter, unless the peripheral requires more wattage than the USB 2.0 port can provide, which is unlikely.
Check the relevant section in any high polling mouse review.
Weighing 55 g, the ambidextrous AX5 Pro Max comes with a magnesium alloy shell. Equipped with PixArt's PAW3395 sensor, the AX5 Pro Max is capable of both Bluetooth and 2.4 GHz, achieving up to 130 hours of battery life, along with 8000 Hz wired and wireless polling.
www.techpowerup.com
If you want sub 1 ms click latency along with the other benefits, such as better tracking etc, then you're unlikely to get that from a 1000 Hz or lower mouse.
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Therefore, use a native USB 3.0 port if your device is fast enough to use it.